Overview

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

Basic Usage

The PlantGenIE Galaxy installation includes a wide range of tools to analyse RNASeq data. This allows users to perform, reproduce and share complete analyses pipelines using a well-designed GUI (graphical user interface). We recommend you to follow the Galaxy wiki for more information.

Data

Galaxy uses in house annotation data and data from Phytozome and Plaza.

Implementation

We customized the Open Source Galaxy tool with PlantGenIE data. Most of the tools are from the Galaxy toolshed while some of them were written by the UPSC Bioinformatics team.